Livestock Metabolome Database: Showing metabocard for Rubidium (LMDB00320)

Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References XML

Record Information

Version

1.0

Creation Date

2016-07-13 19:47:14 UTC

Update Date

2020-03-13 18:12:38 UTC

Lmdb

LMDB00320

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Rubidium

Description

Rubidium is a soft, silvery-white metallic element of the alkali metal group, present in traces amounts in animal tissues and fluids. Rb-87, a naturally occurring isotope, is (slightly) radioactive. Rubidium is very soft and highly reactive, with properties similar to other elements in group 1, like rapid oxidation in air. Rubidium, particularly 87Rb, in the form of vapor, is one of the most commonly-used atomic species employed for laser cooling and Bose-Einstein condensation. Its desirable features for this application include the ready availability of inexpensive diode laser light at the relevant wavelength, and the moderate temperatures required to obtain substantial vapor pressures. Physiologically, it exists as an ion in the body. It has been found slightly increased in neoplastic animal breast tissues obtained from patients at the time of mastectomy, compared to normal tissue. (PMID: 6488192 , 15820728 , 7324778 , 9630429 , 577330 ).

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
RB(+)	ChEBI
Rb+	ChEBI
RUBIDIUM ion	ChEBI
Rubidium(1+)	Kegg
Rubidium +	HMDB
Rubidium	HMDB

Chemical Formula

Average Molecular Weight

85.4678

Monoisotopic Molecular Weight

84.911789341

IUPAC Name

rubidium(1+) ion

Traditional Name

rubidium(1+) ion

CAS Registry Number

7440-17-7

SMILES

[Rb+]

InChI Identifier

InChI=1S/Rb/q+1

InChI Key

NCCSSGKUIKYAJD-UHFFFAOYSA-N

Chemical Taxonomy

Description

belongs to the class of inorganic compounds known as homogeneous alkali metal compounds. These are inorganic compounds containing only metal atoms,with the largest atom being a alkali metal atom.

Kingdom

Inorganic compounds

Super Class

Homogeneous metal compounds

Class

Homogeneous alkali metal compounds

Sub Class

Not Available

Direct Parent

Homogeneous alkali metal compounds

Alternative Parents

Not Available

Substituents

Homogeneous alkali metal

Molecular Framework

Not Available

External Descriptors

rubidium molecular entity (CHEBI:49847 )
alkali metal cation (CHEBI:49847 )
monovalent inorganic cation (CHEBI:49847 )
monoatomic monocation (CHEBI:49847 )
a cation (RB+ )

Ontology

Status

Detected and Quantified

Origin

Not Available

Biofunction

Not Available

Application

Not Available

Cellular locations

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	0 m³·mol⁻¹	ChemAxon
Polarizability	1.78 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-001i-9000000000-ddf16821b4f8d12eb757	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-001i-9000000000-ddf16821b4f8d12eb757	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-001i-9000000000-ddf16821b4f8d12eb757	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-001i-9000000000-8be68b59717be150de6f	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-001i-9000000000-8be68b59717be150de6f	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-001i-9000000000-8be68b59717be150de6f	Spectrum

Biological Properties

Cellular Locations

Not Available

Biofluid Locations and Tissue Locations

Ruminal Fluid
Serum

Concentrations

Biofluid	Status	Value	Condition	Species	Reference	Details
Ruminal Fluid	Detected and Quantified	5.82 +/- 0.08 uM	Not Available	Bovine	Saleem F, Bouatra...	details
Serum	Detected and Quantified	2.75 +/- 0.62 uM	Not Available	Ovine	Candidate serum m...	details

External Links

DrugBank ID

Not Available

HMDB ID

HMDB0001327

FooDB ID

FDB003783

Phenol Explorer ID

Not Available

KNApSAcK ID

Not Available

BiGG ID

Not Available

BioCyc ID

Not Available

METLIN ID

Not Available

PDB ID

Not Available

Wikipedia Link

Chemspider ID

ChEBI ID

PubChem Compound ID

Kegg Compound ID

YMDB ID

Not Available

ECMDB ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Rizk SL, Sky-Peck HH: Comparison between concentrations of trace elements in normal and neoplastic human breast tissue. Cancer Res. 1984 Nov;44(11):5390-4. [6488192 ]
Barany E, Bergdahl IA, Bratteby LE, Lundh T, Samuelson G, Skerfving S, Oskarsson A: Iron status influences trace element levels in human blood and serum. Environ Res. 2005 Jun;98(2):215-23. [15820728 ]
Meurling S, Plantin LO: The concentrations of trace elements in blood from healthy newborn infants. Acta Chir Scand. 1981;147(6):481-5. [7324778 ]
Cornett CR, Ehmann WD, Wekstein DR, Markesbery WR: Trace elements in Alzheimer's disease pituitary glands. Biol Trace Elem Res. 1998 Apr-May;62(1-2):107-14. [9630429 ]
Hagenfeldt K, Landgren BM, Plantin LO, Diczfalusy E: Trace elements in the human endometrium and decidua. A multielement analysis. Acta Endocrinol (Copenh). 1977 Jun;85(2):406-14. [577330 ]

Showing metabocard for Rubidium (LMDB00320)

Structure for LMDB00320 (Rubidium)