Record Information
Version1.0
Creation Date2016-07-13 19:52:29 UTC
Update Date2016-08-09 21:33:36 UTC
LmdbLMDB00557
Secondary Accession NumbersNone
Metabolite Identification
Common NamePC(dm18:1(9Z)/dm18:1(9Z))
DescriptionPC(dm18:1(9Z)/dm18:1(9Z)) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(dm18:1(9Z)/dm18:1(9Z)), in particular, consists of two chains of plasmalogen 18:1n9 at the C-1 and C-2 positions. The plasmalogen 18:1n9 moieties are derived from animal fats, liver and kidney. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC10H15NO4
Average Molecular Weight213.2304
Monoisotopic Molecular Weight213.100107973
IUPAC Name2-oxo-N-[(3S)-2-oxooxolan-3-yl]hexanamide
Traditional Name2-oxo-N-[(3S)-2-oxooxolan-3-yl]hexanamide
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CCOC1=O)NC(=O)C(=O)CCCC
InChI Identifier
InChI=1S/C10H15NO4/c1-2-3-4-8(12)9(13)11-7-5-6-15-10(7)14/h7H,2-6H2,1H3,(H,11,13)/t7-/m0/s1
InChI KeyHXDSMMVKIYAMIA-ZETCQYMHSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid ester
  • N-acyl-alpha amino acid or derivatives
  • Acyl-homoserine lactone
  • Acyl-l-homoserine lactone
  • Fatty amide
  • Gamma butyrolactone
  • N-acyl-amine
  • Fatty acyl
  • Oxolane
  • Carboxamide group
  • Carboxylic acid ester
  • Ketone
  • Lactone
  • Secondary carboxylic acid amide
  • Monocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Oxacycle
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Carbonyl group
  • Organic oxygen compound
  • Organic oxide
  • Organonitrogen compound
  • Organooxygen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
StatusDetected and Quantified
OriginNot Available
BiofunctionNot Available
ApplicationNot Available
Cellular locationsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.51ALOGPS
logP0.8ChemAxon
logS-1.2ALOGPS
pKa (Strongest Acidic)11.61ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area72.47 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity52.03 m³·mol⁻¹ChemAxon
Polarizability21.73 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash KeyView
GC-MSGC-MS Spectrum - GC-MS (Non-derivatized)splash10-03e9-7910000000-ac3ce6fd39cdc04fa91dSpectrum
GC-MSGC-MS Spectrum - GC-MS (1 MEOX; 1 TMS)splash10-0gwr-5920000000-f690d864e229af159d4eSpectrum
GC-MSGC-MS Spectrum - GC-MS (1 MEOX; 1 TMS)splash10-0il0-5920000000-a5b15069564b36e40c85Spectrum
GC-MSGC-MS Spectrum - GC-MS (Non-derivatized)splash10-03e9-7910000000-ebc14f9a7070bbcba455Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-03di-2980000000-5d0f255c316a1986ab65Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0ikm-9710000000-53c0e75a5dc60faf5f35Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-052o-9000000000-1657925cd7e33872251eSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0ik9-1890000000-6fbb493b295d014b5558Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-0w2i-7910000000-ea196f0288ca387e01dfSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-007o-9200000000-a08c59141b8c4c21d383Spectrum
Biological Properties
Cellular LocationsNot Available
Biofluid Locations and Tissue Locations
  • Plasma
  • Ruminal Fluid
  • Serum
Concentrations
BiofluidStatusValueConditionSpeciesReferenceDetails
PlasmaDetected but not QuantifiedNot ApplicableNot AvailableBovine details
Ruminal FluidDetected and Quantified0.019 uMNot AvailableBovine details
Ruminal FluidDetected and Quantified0.104 uMNot AvailableBovine details
Ruminal FluidDetected and Quantified0.263 uMNot AvailableBovine details
Ruminal FluidDetected and Quantified0.642 uMNot AvailableBovine details
Ruminal FluidDetected and Quantified0.501 +/- 0.341 uMNot AvailableBovine
    • Saleem F, Bouatra...
details
Ruminal FluidDetected and Quantified0.531 +/- 0.436 uMNot AvailableBovine
    • Saleem F, Bouatra...
details
Ruminal FluidDetected and Quantified0.564 +/- 0.381 uMNot AvailableBovine
    • Saleem F, Bouatra...
details
Ruminal FluidDetected and Quantified0.601 +/- 0.735 uMNot AvailableBovine
    • Saleem F, Bouatra...
details
Ruminal FluidDetected and Quantified0.601 +/- 0.735 uMNot AvailableBovine
    • Saleem F, Bouatra...
details
SerumDetected and Quantified110.9 uMNot AvailablePorcine
    • Barbara U. Metzle...
details
SerumDetected and Quantified127.9 uMNot AvailablePorcine
    • Barbara U. Metzle...
details
SerumDetected and Quantified85.9 uMNot AvailablePorcine
    • Barbara U. Metzle...
details
SerumDetected and Quantified151.8 uMNot AvailablePorcine
    • Barbara U. Metzle...
details
SerumDetected but not QuantifiedNot ApplicableNot AvailableBovine details
SerumDetected but not QuantifiedNot ApplicableNot AvailableBovine details
DrugBank IDNot Available
HMDB IDNot Available
FooDB IDNot Available
Phenol Explorer IDNot Available
KNApSAcK IDNot Available
BiGG IDNot Available
BioCyc IDNot Available
METLIN IDNot Available
PDB IDNot Available
Wikipedia LinkNot Available
Chemspider IDNot Available
ChEBI IDNot Available
PubChem Compound ID45109776
Kegg Compound IDNot Available
YMDB IDNot Available
ECMDB IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available