Livestock Metabolome Database: Showing metabocard for N-Acetylgalactosamine (LMDB00778)

Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References XML

Record Information

Version

1.0

Creation Date

2016-07-30 18:17:59 UTC

Update Date

2016-08-01 19:17:24 UTC

Lmdb

LMDB00778

Secondary Accession Numbers

None

Metabolite Identification

Common Name

N-Acetylgalactosamine

Description

N-Acetylgalactosamine, also known as Tn or alpha-galnac, belongs to the class of organic compounds known as n-acyl-alpha-hexosamines. These are carbohydrate derivatives containing a hexose moiety in which the oxygen atom is replaced by an n-acyl group. N-Acetylgalactosamine is an extremely weak basic (essentially neutral) compound (based on its pKa). ganglioside GM3 (D18:1/24:1(15Z)) and N-acetylgalactosamine can be biosynthesized from ganglioside GM2 (D18:1/24:0) through the action of the enzyme hexosaminidase a. An N-acetyl-D-galactosamine having alpha-configuration at the anomeric centre. In humans, N-acetylgalactosamine is involved in the metabolic disorder called the g(m2)-gangliosidosis: variant b, tay-sachs disease pathway. Outside of the human body, N-Acetylgalactosamine has been detected, but not quantified in, several different foods, such as common sages, new zealand spinachs, garden onions, malabar plums, and wild rices. This could make N-acetylgalactosamine a potential biomarker for the consumption of these foods.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
2-(Acetylamino)-2-deoxy-alpha-D-galactopyranose	ChEBI
alpha-GalNAc	ChEBI
alpha-GalpNAc	ChEBI
GalNAc-alpha	ChEBI
Tn	ChEBI
TN Antigen saccharide	ChEBI
TN Antigen saccharide component	ChEBI
TN Saccharide	ChEBI
TN Saccharide component	ChEBI
2-(Acetylamino)-2-deoxy-a-D-galactopyranose	Generator
2-(Acetylamino)-2-deoxy-α-D-galactopyranose	Generator
a-GalNAc	Generator
Α-galnac	Generator
a-GalpNAc	Generator
Α-galpnac	Generator
GalNAc-a	Generator
GalNAc-α	Generator
2-Acetamido-2-deoxy-a-D-allopyranose	HMDB
2-Acetamido-2-deoxy-a-D-glucopyranose	HMDB
2-Acetamido-2-deoxy-alpha-D-allopyranose	HMDB
2-Acetamido-2-deoxy-alpha-D-glucopyranose	HMDB
2-Acetamido-2-deoxy-alpha-delta-allopyranose	HMDB
2-Acetamido-2-deoxy-alpha-delta-glucopyranose	HMDB
2-Acetamido-2-deoxy-b-D-glucopyranose	HMDB
2-Acetamido-2-deoxy-beta-D-glucopyranose	HMDB
2-Acetamido-2-deoxy-beta-delta-glucopyranose	HMDB
2-Acetamido-2-desoxy-b-D-talofuranose	HMDB
2-Acetamido-2-desoxy-beta-D-talofuranose	HMDB
2-Acetamido-2-desoxy-beta-delta-talofuranose	HMDB
2-Acetamino-2-deoxy-a-D-glucose	HMDB
2-Acetamino-2-deoxy-alpha-D-glucose	HMDB
2-Acetamino-2-deoxy-alpha-delta-glucose	HMDB
2-Acetamino-2-desoxy-a-D-glucopyranose	HMDB
2-Acetamino-2-desoxy-alpha-D-glucopyranose	HMDB
2-Acetamino-2-desoxy-alpha-delta-glucopyranose	HMDB
2-Acetamino-2-desoxy-D-galaktose	HMDB
2-Acetamino-2-desoxy-D-glucose	HMDB
2-Acetamino-2-desoxy-delta-galaktose	HMDB
2-Acetamino-2-desoxy-delta-glucose	HMDB
2-Acetylamino-2-deoxy-a-D-galactopyranose	HMDB
2-Acetylamino-2-deoxy-a-D-glucopyranose	HMDB
2-Acetylamino-2-deoxy-a-D-mannopyranose	HMDB
2-Acetylamino-2-deoxy-alpha-D-galactopyranose	HMDB
2-Acetylamino-2-deoxy-alpha-D-glucopyranose	HMDB
2-Acetylamino-2-deoxy-alpha-D-mannopyranose	HMDB
2-Acetylamino-2-deoxy-alpha-delta-galactopyranose	HMDB
2-Acetylamino-2-deoxy-alpha-delta-glucopyranose	HMDB
2-Acetylamino-2-deoxy-alpha-delta-mannopyranose	HMDB
2-Acetylamino-2-deoxy-b-D-allopyranose	HMDB
2-Acetylamino-2-deoxy-b-D-altropyranose	HMDB
2-Acetylamino-2-deoxy-b-D-galactopyranose	HMDB
2-Acetylamino-2-deoxy-b-D-glucopyranose	HMDB
2-Acetylamino-2-deoxy-b-D-mannopyranose	HMDB
2-Acetylamino-2-deoxy-beta-D-allopyranose	HMDB
2-Acetylamino-2-deoxy-beta-D-altropyranose	HMDB
2-Acetylamino-2-deoxy-beta-D-galactopyranose	HMDB
2-Acetylamino-2-deoxy-beta-D-glucopyranose	HMDB
2-Acetylamino-2-deoxy-beta-D-mannopyranose	HMDB
2-Acetylamino-2-deoxy-beta-delta-allopyranose	HMDB
2-Acetylamino-2-deoxy-beta-delta-altropyranose	HMDB
2-Acetylamino-2-deoxy-beta-delta-galactopyranose	HMDB
2-Acetylamino-2-deoxy-beta-delta-glucopyranose	HMDB
2-Acetylamino-2-deoxy-beta-delta-mannopyranose	HMDB
2-Acetylamino-2-desoxy-a-D-galaktose	HMDB
2-Acetylamino-2-desoxy-a-D-mannose	HMDB
2-Acetylamino-2-desoxy-alpha-D-galaktose	HMDB
2-Acetylamino-2-desoxy-alpha-D-mannose	HMDB
2-Acetylamino-2-desoxy-alpha-delta-galaktose	HMDB
2-Acetylamino-2-desoxy-alpha-delta-mannose	HMDB
2-Acetylamino-2-desoxy-b-D-galaktose	HMDB
2-Acetylamino-2-desoxy-b-D-mannose	HMDB
2-Acetylamino-2-desoxy-beta-D-galaktose	HMDB
2-Acetylamino-2-desoxy-beta-D-mannose	HMDB
2-Acetylamino-2-desoxy-beta-delta-galaktose	HMDB
2-Acetylamino-2-desoxy-beta-delta-mannose	HMDB
2-Acetylamino-2-desoxy-D-mannose	HMDB
2-Acetylamino-2-desoxy-delta-mannose	HMDB
2-Acetylamino-2-desoxy-DL-glucopyranose	HMDB
2-Acetylamino-a-D-2-deoxy-galactopyranose	HMDB
2-Acetylamino-a-D-2-deoxy-glucopyranose	HMDB
2-Acetylamino-a-D-2-deoxy-glucose	HMDB
2-Acetylamino-a-D-2-deoxy-mannopyranose	HMDB
2-Acetylamino-alpha-D-2-deoxy-galactopyranose	HMDB
2-Acetylamino-alpha-D-2-deoxy-glucopyranose	HMDB
2-Acetylamino-alpha-D-2-deoxy-glucose	HMDB
2-Acetylamino-alpha-D-2-deoxy-mannopyranose	HMDB
2-Acetylamino-alpha-delta-2-deoxy-galactopyranose	HMDB
2-Acetylamino-alpha-delta-2-deoxy-glucopyranose	HMDB
2-Acetylamino-alpha-delta-2-deoxy-glucose	HMDB
2-Acetylamino-alpha-delta-2-deoxy-mannopyranose	HMDB
2-Acetylamino-b-D-2-deoxy-galactopyranose	HMDB
2-Acetylamino-b-D-2-deoxy-glucopyranose	HMDB
2-Acetylamino-b-D-2-deoxy-mannopyranose	HMDB
2-Acetylamino-beta-D-2-deoxy-galactopyranose	HMDB
2-Acetylamino-beta-D-2-deoxy-glucopyranose	HMDB
2-Acetylamino-beta-D-2-deoxy-mannopyranose	HMDB
2-Acetylamino-beta-delta-2-deoxy-galactopyranose	HMDB
2-Acetylamino-beta-delta-2-deoxy-glucopyranose	HMDB
2-Acetylamino-beta-delta-2-deoxy-mannopyranose	HMDB
2-Acetylamino-D-2-deoxy-galactose	HMDB
2-Acetylamino-D-2-deoxy-glucose	HMDB
2-Acetylamino-D-2-deoxy-gulose	HMDB
2-Acetylamino-D-2-deoxy-idose	HMDB
2-Acetylamino-D-2-deoxy-mannose	HMDB
2-Acetylamino-D-2-deoxy-talose	HMDB
2-Acetylamino-delta-2-deoxy-galactose	HMDB
2-Acetylamino-delta-2-deoxy-glucose	HMDB
2-Acetylamino-delta-2-deoxy-gulose	HMDB
2-Acetylamino-delta-2-deoxy-idose	HMDB
2-Acetylamino-delta-2-deoxy-mannose	HMDB
2-Acetylamino-delta-2-deoxy-talose	HMDB
2-Acetylamino-L-2-deoxy-galactose	HMDB
2-Acetylamino-L-2-deoxy-mannose	HMDB
a-2-Acetamido-2-deoxy-D-galactose	HMDB
alpha-2-Acetamido-2-deoxy-D-galactose	HMDB
alpha-2-Acetamido-2-deoxy-delta-galactose	HMDB
GalNAc	HMDB
N-(2,4,5-Trihydroxy-6-hydroxymethyl-tetrahydro-pyran-3-yl)-acetamide	HMDB
N-Acetyl-a-D-glucosamine	HMDB
N-Acetyl-alpha-D-glucosamine	HMDB
N-Acetyl-alpha-delta-glucosamine	HMDB
N-Acetyl-D-allosamine	HMDB
N-Acetyl-D-galactosamine	HMDB
N-Acetyl-delta-allosamine	HMDB
N-Acetyl-delta-galactosamine	HMDB
N-Acetylgalactosamin	HMDB
N-Acetylglucosamin	HMDB
N-Acetylgluosamin	HMDB
N-Acetylmannosamin	HMDB
2 Acetamido 2 deoxy D galactose	HMDB
2-Acetamido-2-D-galactopyranose	HMDB
Acetylgalactosamine	HMDB
2-Acetamido-2-deoxygalactose	HMDB
N Acetyl D galactosamine	HMDB
2 Acetamido 2 D galactopyranose	HMDB
2 Acetamido 2 deoxygalactose	HMDB
2-Acetamido-2-deoxy-D-galactose	HMDB
N-Acetyl-a-D-galactosamine	HMDB
N-Acetyl-α-D-galactosamine	HMDB
a-N-Acetyl-D-galactosamine	HMDB
Α-N-acetyl-D-galactosamine	HMDB

Chemical Formula

C₈H₁₅NO₆

Average Molecular Weight

221.2078

Monoisotopic Molecular Weight

221.089937217

IUPAC Name

N-[(2S,3R,4R,5R,6R)-2,4,5-trihydroxy-6-(hydroxymethyl)oxan-3-yl]acetamide

Traditional Name

α-GalNAc

CAS Registry Number

Not Available

SMILES

CC(=O)N[C@H]1[C@@H](O)O[C@H](CO)[C@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6+,7-,8+/m1/s1

InChI Key

OVRNDRQMDRJTHS-CBQIKETKSA-N

Chemical Taxonomy

Description

belongs to the class of organic compounds known as n-acyl-alpha-hexosamines. These are carbohydrate derivatives containing a hexose moiety in which the oxygen atom is replaced by an n-acyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

N-acyl-alpha-hexosamines

Alternative Parents

Substituents

N-acyl-alpha-hexosamine
Hexose monosaccharide
Monosaccharide
Oxane
Hemiacetal
Secondary alcohol
Carboximidic acid
Carboximidic acid derivative
Oxacycle
Organoheterocyclic compound
Polyol
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Alcohol
Organonitrogen compound
Organic nitrogen compound
Primary alcohol
Organopnictogen compound
Hydrocarbon derivative
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

N-acetyl-D-galactosamine (CHEBI:40356 )

Ontology

Status

Detected but not Quantified

Origin

Not Available

Biofunction

Not Available

Application

Not Available

Cellular locations

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.6	ALOGPS
logP	-3.2	ChemAxon
logS	0.06	ALOGPS
pKa (Strongest Acidic)	11.6	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	119.25 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	47.02 m³·mol⁻¹	ChemAxon
Polarizability	20.58 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-0kn9-9510000000-8257171f06e4c704d6c7	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (4 TMS) - 70eV, Positive	splash10-006y-5125900000-2d5a04f77a0106be2e7f	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_1) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_2) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_3) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_4) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_5) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_1) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_2) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_3) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_4) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_5) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_6) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_7) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_8) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_9) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_10) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_3_1) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_3_2) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_3_3) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_3_4) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_3_5) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_3_6) - 70eV, Positive	Not Available	Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_3_7) - 70eV, Positive	Not Available	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - Quattro_QQQ 10V, Positive (Annotated)	splash10-0udr-0970000000-f6d052d0a798e4e2edee	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - Quattro_QQQ 25V, Positive (Annotated)	splash10-003s-9500000000-8dc5f0ece3a66ea3928d	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - Quattro_QQQ 40V, Positive (Annotated)	splash10-001j-9000000000-23b0bbbd1c8a5ad5551e	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 20V, Negative	splash10-0a4i-9300000000-c5b00d3c0c640460939c	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 35V, Negative	splash10-0kmi-7690000000-0379d0dd56fec2bed44f	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 10V, Negative	splash10-0a4i-9510000000-422cde531f065d5e4946	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 40V, Negative	splash10-0540-9100000000-0ce448f2f58df56a856d	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 20V, Positive	splash10-002n-9800000000-ec7209a768c753d47709	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 10V, Positive	splash10-000i-2900000000-b13dd76a5e0c01867c4c	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 35V, Positive	splash10-002u-2900000000-166169863c3bda7fcd02	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 35V, Positive	splash10-004u-2900000000-dac77e9deddac603f878	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 10V, Positive	splash10-002u-2910000000-f4490188227492913aee	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 40V, Positive	splash10-0f8a-9000000000-95e011521a10f2c0f12a	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 20V, Positive	splash10-003e-9700000000-8e49c95be0c9d841080f	Spectrum
LC-MS/MS	LC-MS/MS Spectrum - 40V, Positive	splash10-00lv-9000000000-2cc319b93d5874dd2978	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-00fr-0690000000-76eea9cfdbd489aa104e	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0imi-2930000000-440841c73a9eca07c5df	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-02nm-9600000000-e4f081a779068ec3341c	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-00dr-8920000000-b0218f0ec55de02b404d	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0pb9-9820000000-ecdc02d885b289c2e845	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0a4i-9100000000-582cce650e2eb7e1c0ea	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0udi-0390000000-3820a7eec5a8c72f49d9	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0h90-9740000000-db880363194a3979c637	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0229-9200000000-cdcf015aa799dc7d6d8b	Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0a4i-9500000000-2c2b09cb6bfb29039085	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
1D NMR	13C NMR Spectrum	Not Available	Spectrum
1D NMR	1H NMR Spectrum	Not Available	Spectrum
2D NMR	[1H,13C] 2D NMR Spectrum	Not Available	Spectrum

Biological Properties

Cellular Locations

Not Available

Biofluid Locations and Tissue Locations

Milk

Concentrations

Biofluid	Status	Value	Condition	Species	Reference	Details
Milk	Detected but not Quantified	Not Applicable	Not Available	Bovine	23438684	details
Milk	Detected but not Quantified	Not Applicable	Not Available	Bovine	23438684	details