Showing metabocard for PC(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) (LMDB01146)

IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesXML
Record Information
Version1.0
Creation Date2020-03-18 19:04:40 UTC
Update Date2021-04-30 20:57:45 UTC
LmdbLMDB01146
Secondary Accession NumbersNone
Metabolite Identification
Common NamePC(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))
DescriptionPC(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) is a phosphatidylchloline (PC). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylcholines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PC(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)), in particular, consists of two 6Z,9Z,12Z-octadecatrienoyl chains at positions C-1 and C-2. In E. coli, PCs can be found in the integral component of the cell outer membrane. They are hydrolyzed by Phospholipases to a 2-acylglycerophosphocholine and a carboxylate.
Structure
Thumb
MOLSDFPDBSMILESInChI
Synonyms
ValueSource
1,2-Dig-linolenoyl-rac-glycero-3-phosphocholineHMDB
Phosphatidylcholine(36:6)HMDB
GPCho(18:3/18:3)HMDB
PC(18:3/18:3)HMDB
GPCho(36:6)HMDB
Phosphatidylcholine(18:3/18:3)HMDB
LecithinHMDB
PC(36:6)HMDB
1,2-Di(6Z,9Z,12Z-octadecatrienoyl)-rac-glycero-3-phosphocholineHMDB
PC(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))Lipid Annotator
1,2-Digamma-linolenoyl-GPCHMDB
1,2-Digamma-linolenoyl-sn-glycero-3-phosphocholineHMDB
1,2-Digamma-linolenoyl-sn-glycero-phosphatidylcholineHMDB
1,2-Dilinolenoyl-GPCHMDB
GPC(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))HMDB
GPC(18:3/18:3)HMDB
GPC(18:3n6/18:3n6)HMDB
GPC(18:3w6/18:3w6)HMDB
GPC(36:6)HMDB
GPCho(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))HMDB
GPCho(18:3n6/18:3n6)HMDB
GPCho(18:3w6/18:3w6)HMDB
PC(18:3n6/18:3n6)HMDB
PC(18:3w6/18:3w6)HMDB
Phosphatidylcholine(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))HMDB
Phosphatidylcholine(18:3n6/18:3n6)HMDB
Phosphatidylcholine(18:3w6/18:3w6)HMDB
Chemical FormulaNot Available
Average Molecular WeightNot Available
Monoisotopic Molecular WeightNot Available
IUPAC Name(2-{[(2R)-2,3-bis[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propyl phosphono]oxy}ethyl)trimethylazanium
Traditional Name(2-{[(2R)-2,3-bis[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propyl phosphono]oxy}ethyl)trimethylazanium
CAS Registry NumberNot Available
SMILES
InChI Identifier
Not Available
InChI KeyNot Available
Chemical Taxonomy
Description belongs to the class of organic compounds known as phosphatidylcholines. These are glycerophosphocholines in which the two free -OH are attached to one fatty acid each through an ester linkage.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct ParentPhosphatidylcholines
Alternative Parents
Substituents
  • Diacylglycero-3-phosphocholine
  • Phosphocholine
  • Fatty acid ester
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Amine
  • Organic salt
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
StatusDetected and Quantified
OriginNot Available
BiofunctionNot Available
ApplicationNot Available
Cellular locationsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.39ALOGPS
logP7.72ChemAxon
logS-7.4ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-6.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area111.19 ŲChemAxon
Rotatable Bond Count38ChemAxon
Refractivity240.97 m³·mol⁻¹ChemAxon
Polarizability91.3 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash KeyView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-0gw0-9051062400-2ab5c3d7e57a46b9f0abSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-03yr-6395053100-c11a9fac803d69a539aaSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-00li-9057042100-801279366073e36f1124Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-004i-0090000400-09785e8202c3360f75f8Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-056r-0090001000-8d2e3bfb83bae0d857e8Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-004i-4090100000-b8f36391ccc83e0bd68eSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-0udi-0000000090-e97180150486da753e49Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0udi-0000000190-cd910875d8659ad53678Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-014k-0900139110-729a620391bf787edc7eSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-004i-0000000900-e158c1e70dedba30b57eSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0059-0600000900-259bce635b325b3b4835Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-001i-1900030300-f4f11a4f3ff53231bc3cSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-001i-0000000900-41c33084af9f783c847dSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-001i-0000000900-dd151cc7bd543b751825Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-0ue9-0200249400-bc8c4d38f7130b86115dSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-004i-0000000900-5a1f7e5d648203ccaa08Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-004i-1091010400-143b161378be43e4d254Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-004i-4291000000-bc08a5584b3d5f3ac6d9Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-03di-0000000090-87e491c712a61c58fe72Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-03di-0010000090-a9763bdd0b25569e54adSpectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-03i0-0090000090-9c024dd2a2f08c7e97bcSpectrum
Biological Properties
Cellular LocationsNot Available
Biofluid Locations and Tissue Locations
  • Serum
Concentrations
BiofluidStatusValueConditionSpeciesReferenceDetails
SerumDetected and Quantified0.652 +/- 0.1985 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.5873 +/- 0.1295 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.608 +/- 0.1558 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.577 +/- 0.256 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.6461 +/- 0.1695 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.5622 +/- 0.177 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.591 +/- 0.2005 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.6625 +/- 0.1986 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.6653 +/- 0.3255 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.6375 +/- 0.2177 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.604 +/- 0.2868 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
SerumDetected and Quantified0.34 +/- 0.15 uMNot AvailableOvine
    • Candidate serum m...
 details
SerumDetected and Quantified0.636 +/- 0.2256 uM
Normal		Ovine
    • Goldansaz et al.,...
 details
DrugBank IDNot Available
HMDB IDHMDB0008172
FooDB IDNot Available
Phenol Explorer IDNot Available
KNApSAcK IDNot Available
BiGG IDNot Available
BioCyc IDNot Available
METLIN IDNot Available
PDB IDNot Available
Wikipedia LinkNot Available
Chemspider ID24766834
ChEBI ID89557
PubChem Compound ID52922787
Kegg Compound IDNot Available
YMDB IDYMDB01985
ECMDB IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available